consensus sequence


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consensus sequence

[kən′sen·səs ‚sē·kwəns]
(genetics)
An average nucleotide sequence; each nucleotide is the most frequent at its position in the sequence.
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References in periodicals archive ?
List of heat shock elements deduced, their position and matching percent accuracy to the consensus sequence (in Red).
Finally, the consensus sequence of the 2016 H5N8 virus was compared with the consensus sequence of the virus detected in the Netherlands in 2014, when 5 commercial poultry holdings were infected (results not shown).
Generation of full-length class I human leukocyte antigen gene consensus sequences for novel allele character ization [published online ahead of print September 27, 2016].
Compared to the consensus sequence of vaccinal strains used in Pakistan and other representative strains, a number of substitution mutations in residue sequences were recorded such as the fusion peptide (117-142aa) at position 117 (L-F), 121 (I-V) and 124 (G-S), 139 S-A, hydrophilic region-a (143-185aa) at position 145 (K-N),170 (D/G-N),176(A-S) hydrophilic region-b (268-299aa) at position 272 (N-Y), 275(F-L), 288 (T-N) and hydrophilic region-c (471-500aa) at position 472 (H-N), 479 (N-D), 482(E/A/V/S-T), 486 (R-S) 494(K-R).
The Omixon Twin software as well as our implemented custom downstream analytical framework addresses this growing gap, allowing full-length gene read phasing, consensus sequence generation and the characterization of novel class I HLA alleles.
Chromatograms obtained by sequencing were analyzed, and consensus sequences were assembled using 4 sStaden package programs (STADEN et al.
The final population of sequences studied was the following: 15 consensus sequences for the histidine kinases, REC/25 consensus sequences, and HTH_AraC/15 consensus sequences for response regulators.
Part of the bioinformatics data associated with the tiled consensus sequence generated is a measure of certainty, or quality, at each nucleotide position to give the end user some sense of the level of statistical certainty for each base position.
The oligonucleotides (MWG Biotech AG) were designed in order to clone the lexA box consensus sequence into the pBR322 vector upstream the b/aTEM-i reporter gene.
CAACA###RAV1AAT###1###4###6###2###4###CAACA is a binding consensus sequence of Arabidopsis transcription factor, RAV1
The human genome reference is a consensus sequence, which is a politically wonderful outcome.