consensus sequence

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consensus sequence

[kən′sen·səs ‚sē·kwəns]
(genetics)
An average nucleotide sequence; each nucleotide is the most frequent at its position in the sequence.
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In order to study substitutions along NS5B protein, Uruguayan HCV AA sequences were aligned to the NS5B world consensus sequences. Almost full-length AA sequences were obtained in 26 out of 31 analyzed strains.
(@) Number of hits: *, 1-10; **, 11-99; ***, 100-1000; ***, 1000-3500; Sp1 consensus sequence 5'-(G/T)GGGCGG(G/A)(G/A)(C/T)-3' is underlined; G-runs are highlighted by red color.
List of heat shock elements deduced, their position and matching percent accuracy to the consensus sequence (in Red).
A Chr 1 consensus sequence was constructed for each strain using the SNP information from MGP.
Consequently, there is a clear need for a NGS based HLA genotyping method and analytical pipeline that not only can generate accurate HLA genotyping information, but also generate an accurate, fully phased HLA consensus sequence for both genotyped alleles.
In order to compare the consensus sequence (~1400bp) with other sequences available on GenBank database <http://www.ncbi.nlm.nih.
In the acidic lipase, there are four consensus sequences for N-glycosylation of the enzyme which is Asn-X-Ser/Thr (Fig.
The sequencing platforms will allow the researchers to cross-validate consensus sequences to produce the highest possible genome sequence accuracy.
pIL-6P-luc710 contains the four consensus sequences for the transcription factors activating-protein-1 (AP-1), cAMP-responsive element binding protein (CREB), CCAAT-enhancer binding protein-[beta] (C/EBP-[beta]), and nuclear factor [kappa]-light-chain-enhancer of activated B cells (NF-[kappa]B) as pIL-6P-luc1184.