consensus sequence


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consensus sequence

[kən′sen·səs ‚sē·kwəns]
(genetics)
An average nucleotide sequence; each nucleotide is the most frequent at its position in the sequence.
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References in periodicals archive ?
List of heat shock elements deduced, their position and matching percent accuracy to the consensus sequence (in Red).
ISOLATION, SEQUENCING AND IN SILICO CHARACTERIZATION OF PROMOTER REGION OF HSPA6 GENE FROM ARABIAN CAMEL (CAMELUS DROMEDARIES)
Finally, the consensus sequence of the 2016 H5N8 virus was compared with the consensus sequence of the virus detected in the Netherlands in 2014, when 5 commercial poultry holdings were infected (results not shown).
Multiple Reassorted Viruses as Cause of Highly Pathogenic Avian Influenza A(H5N8) Virus Epidemic, the Netherlands, 2016
Generation of full-length class I human leukocyte antigen gene consensus sequences for novel allele character ization [published online ahead of print September 27, 2016].
Targeted Next-Generation Sequencing for Human Leukocyte Antigen Typing in a Clinical Laboratory: Metrics of Relevance and Considerations for Its Successful Implementation
Compared to the consensus sequence of vaccinal strains used in Pakistan and other representative strains, a number of substitution mutations in residue sequences were recorded such as the fusion peptide (117-142aa) at position 117 (L-F), 121 (I-V) and 124 (G-S), 139 S-A, hydrophilic region-a (143-185aa) at position 145 (K-N),170 (D/G-N),176(A-S) hydrophilic region-b (268-299aa) at position 272 (N-Y), 275(F-L), 288 (T-N) and hydrophilic region-c (471-500aa) at position 472 (H-N), 479 (N-D), 482(E/A/V/S-T), 486 (R-S) 494(K-R).
Molecular Characterization and Epitope Mapping of Fusion (F) and Hemagglutinin (HN) Genes of Avian Paramyxovirus Serotype I from Peacocks in Pakistan
The Omixon Twin software as well as our implemented custom downstream analytical framework addresses this growing gap, allowing full-length gene read phasing, consensus sequence generation and the characterization of novel class I HLA alleles.
Generation of Full-Length Class I Human Leukocyte Antigen Gene Consensus Sequences for Novel Allele Characterization
Chromatograms obtained by sequencing were analyzed, and consensus sequences were assembled using 4 sStaden package programs (STADEN et al.
Pyogranulomatous dermatitis and panniculitis due to Nocardia nova in a cat/Dermatite e paniculite piogranulomatosas causadas por Nocardia nova em um gato
According to the results of multiple alignments of all the obtained consensus sequences, it was possible to detect differences between the species T.
Molecular identification of Trichogramma species from regions in Brazil using the sequencing of the ITS2 region of ribosomal DNA/Identificacao molecular de especies de Trichogramma de regioes do Brasil utilizando o sequenciamento da regiao ITS2 do DNA ribossomal
The final population of sequences studied was the following: 15 consensus sequences for the histidine kinases, REC/25 consensus sequences, and HTH_AraC/15 consensus sequences for response regulators.
Analisis computacional de los reguladores transcripcionales del operon 1,3-propanodiol: indicios sobre la regulacion del metabolismo del glicerol en Clostridium sp
Part of the bioinformatics data associated with the tiled consensus sequence generated is a measure of certainty, or quality, at each nucleotide position to give the end user some sense of the level of statistical certainty for each base position.
In-depth coverage: some useful NGS terms
The oligonucleotides (MWG Biotech AG) were designed in order to clone the lexA box consensus sequence into the pBR322 vector upstream the b/aTEM-i reporter gene.
Curcumin inhibits the SOS response induced by levofloxacin in Escherichia coli
CAACA###RAV1AAT###1###4###6###2###4###CAACA is a binding consensus sequence of Arabidopsis transcription factor, RAV1
Genetic Characterization of Different Tomato Varieties on the Basis of atpB Gene Promoter
The human genome reference is a consensus sequence, which is a politically wonderful outcome.
Genetic deletions in Y chromosome contribute to 8pc of male infertility

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